Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs35552062 chr22:18459468 CT/C 1.5E-7 493 30.8 31.93 27.37 KM Plot
PRAD rs35555573 chr16:5003581 G/A 4.55E-5 475 31.35 29.63 27.77 KM Plot
PRAD rs35575637 chr17:62984879 C/T 1.22E-8 481 30.8 31.87 19.63 KM Plot
PRAD rs35581678 chr10:131792014 C/T 6.73E-6 477 31.87 29.1 26.37 KM Plot
PRAD rs35591726 chr7:6709387 T/C 7.17E-11 480 30.8 27.77 38.33 KM Plot
PRAD rs35591974 chr7:6717902 AG/A 3.13E-7 492 31.18 26.7 50.03 KM Plot
PRAD rs35601731 chr5:138227085 C/CT 0.000129 488 31.37 31.12 25.5 KM Plot
PRAD rs35608917 chr1:202726224 TG/TGG 5.28E-6 492 30.93 29.17 37.17 KM Plot
PRAD rs35613850 chr11:28548550 AT/A 9.2E-5 476 28.87 31.38 32.25 KM Plot
PRAD rs35625068 chr2:178790963 G/GA 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35625771 chr2:178794964 T/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35641196 chr2:178800112 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35644498 chr7:6773904 C/T 2.49E-5 484 31 31.13 42.42 KM Plot
PRAD rs35647999 chr11:24247220 C/T 0.000163 492 30.93 32.13 20.47 KM Plot
PRAD rs35654688 chr5:179035183 T/C 0.00015 484 30.73 34.37 32.9 KM Plot